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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3430639_3433784_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3430639 - 3433784
Intron Length:
3146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTATGTCTT
5'SS Class:
major
3'SS Sequence:
TTCCCTCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TCACCTTTAACT
Flanking Amino Acid:
KQKLNIEISDEFLVQFRQDK
Intron Amino Acid Position:
1096

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.45
1.1
68.1
42.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
73.1
0.52
0.7
65.9
30.2
Minor 5ss
47.5
-0.2
2.8
63.9
41.5
Minor BPS
75
0.86
1.2
82.24
39

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012947
3429804 - 3509635
79832
ENSAPLT00000033988
3429804 - 3509635
79832
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832