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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34405311_34406976_R

Intron Information:

Intron Rank:
133355
Intron Class:
major
Intron Phase:
Intron Coordinates:
34405311 - 34406976
Intron Length:
1666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TGGTTAATTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
69.1
0.43
1
60.2
45
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
64.2
0.52
1.7
84.29
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018985
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030858
34382236 - 34407181
24946