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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3440818_3441237_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3440818 - 3441237
Intron Length:
420

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
AATTTTATCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTTGCTTCAATT
Flanking Amino Acid:
KIYEFTLQRLMQKYFLEMKN
Intron Amino Acid Position:
878

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
74.5
35.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
76.3
0.59
0.9
70
39.3
Minor 5ss
48
-0.2
2.5
65.4
40.1
Minor BPS
59.6
0.38
1.7
75.4
42.3

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832
ENSAPLT00000033988
3429804 - 3509635
79832