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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3441313_3446926_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3441313 - 3446926
Intron Length:
5614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTCAT
5'SS Class:
major
3'SS Sequence:
TTTAACTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
GTTTGTTTAACT
Flanking Amino Acid:
VIWAYWLGYKVRREYRKFFR
Intron Amino Acid Position:
824

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1.1
70.9
40.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
84.6
0.78
0.8
81.4
35.8
Minor 5ss
34.9
-1.7
3.2
50.2
46
Minor BPS
73
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024058
3429804 - 3509635
79832