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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3447387_3448448_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3447387 - 3448448
Intron Length:
1062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TAATTGTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATT
Flanking Amino Acid:
IVQSYIRGWKARKLLRELKH
Intron Amino Acid Position:
766

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
81
26.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.3
0.66
1
72.6
41.9
Minor 5ss
36
-1.6
2.8
44.6
43.4
Minor BPS
79
0.99
1
87.98
30.9

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832
ENSAPLT00000033988
3429804 - 3509635
79832