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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3448518_3450363_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3448518 - 3450363
Intron Length:
1846

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
ATTTCCAATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATGTATTTATTT
Flanking Amino Acid:
VIAAWYRRYAQQKKYQKIKS
Intron Amino Acid Position:
743

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
71.8
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.1
0.54
1
68
37.1
Minor 5ss
41.8
-0.9
3.2
62
43.4
Minor BPS
53.1
0.18
1.7
70.85
40.8

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033988
3429804 - 3509635
79832
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832