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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3452933_3454870_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3452933 - 3454870
Intron Length:
1938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTACT
5'SS Class:
major
3'SS Sequence:
CCGTATTGTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTTTCCGTATTG
Flanking Amino Acid:
CFRIQHYAGKVMYQVEGFVD
Intron Amino Acid Position:
519

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
75.5
40.4
Major BPS
79
0.72
1
69
38.9
Major PPT
71.2
0.48
1
68.5
41.8
Minor 5ss
42.8
-0.8
2.9
61.5
42.8
Minor BPS
54.8
0.01
2.3
70.91
42.8

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832
ENSAPLT00000033988
3429804 - 3509635
79832