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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34660573_34665881_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34660573 - 34665881
Intron Length:
5309

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTAATGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTGTAATG
Flanking Amino Acid:
SSMIQSQEKPDRVLVRIKDL
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1.2
84.1
30.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.7
0.58
1
70.5
39.1
Minor 5ss
39.2
-1.2
2.8
50
46.3
Minor BPS
63.9
0.3
2.1
74.65
38.4

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200