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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34671048_34679152_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34671048 - 34679152
Intron Length:
8105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTTATTGACA
Flanking Amino Acid:
ASKQMVKFAANINKESIVDV
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
79.6
0.67
1
76.4
36.7
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
65
0.47
1.6
74.96
36.4

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200