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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34679256_34680404_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34679256 - 34680404
Intron Length:
1149

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATTTTT
5'SS Class:
major
3'SS Sequence:
CTTTCACTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCTTCTTTCACT
Flanking Amino Acid:
QQDVELHVQRIYVISLAEPR
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
80.7
34.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
84.8
0.78
0.7
81.7
29
Minor 5ss
45.8
-0.4
2.8
59.1
45.4
Minor BPS
72.5
0.79
1.7
87.23
39

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200