About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34680486_34680925_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
34680486 - 34680925
Intron Length:
440

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAAAACT
5'SS Class:
major
3'SS Sequence:
CACAACTGTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TGTATATTAATT
Flanking Amino Acid:
AVRPEVEGEEDGRATVNQDT
Intron Amino Acid Position:
173

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
0.9
76.6
31.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
58.2
0.18
1
54.2
40.7
Minor 5ss
30
-2.3
3
41.1
44.9
Minor BPS
62.3
0.46
1.6
78.52
37.4

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200