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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34680986_34688759_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34680986 - 34688759
Intron Length:
7774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATCT
Flanking Amino Acid:
RLDNRVIDLRTSTSQAVFCL
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
77.9
38.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.6
0.78
0.7
80
25.6
Minor 5ss
40.6
-1
2.9
49.4
46.6
Minor BPS
65.8
0.57
1.6
83.94
37.1

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200