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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34693435_34694437_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34693435 - 34694437
Intron Length:
1003

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTGG
5'SS Class:
major
3'SS Sequence:
TAATCTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
AATCACTTAATG
Flanking Amino Acid:
GVEMGDEDDLSTPNEKLLGR
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.1
62.7
44.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
83.6
0.76
0.8
81.2
35.8
Minor 5ss
38.6
-1.3
3
50.3
45.9
Minor BPS
60
0.18
1.6
62.04
39.4

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200