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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34694481_34695128_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34694481 - 34695128
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGATT
5'SS Class:
strong_major
3'SS Sequence:
CATCATCTTTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTTTGCTAACT
Flanking Amino Acid:
KLLGRLVKEKYDTDFYILDK
Intron Amino Acid Position:
388

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
84.4
33
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77.5
0.62
0.9
73.4
36.4
Minor 5ss
38.3
-1.3
3.4
57.5
46.8
Minor BPS
52.4
0.15
2.4
79.84
42.4

Associated Gene:

Gene:
DARS1
Ensembl Gene ID:
ENSAPLG00000001845
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002244
34659353 - 34698552
39200