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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3469456_3470033_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3469456 - 3470033
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
ATTCTTTTATCT
Flanking Amino Acid:
DDAANFRTVRNAMQIVGFMD
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
81.7
0.71
0.8
72.8
37.4
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
62.5
0.47
1.5
79.22
36.9

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832
ENSAPLT00000033988
3429804 - 3509635
79832