About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34724986_34725337_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34724986 - 34725337
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TCATTTGTGACT
Flanking Amino Acid:
PFIRVAAIVTALNKEKARTI
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
80.5
0.69
0.9
76.9
42.1
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
49.8
0.07
2
70.38
41.4

Associated Gene:

Gene:
LCT
Ensembl Gene ID:
ENSAPLG00000016089
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016808
34722132 - 34738758
16627