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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34726468_34726720_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34726468 - 34726720
Intron Length:
253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTGTGAC
U12 Branch Point Sequence:
TGACACACAGCC
Flanking Amino Acid:
IADPGVASYKVAHTILKAHA
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
73.4
43.3
Major BPS
53.6
0.09
1.4
48.8
46.3
Major PPT
74.3
0.55
0.8
65.5
36.1
Minor 5ss
34.5
-1.8
3.5
47.3
48.3
Minor BPS
39
-0.8
2
48.88
39.7

Associated Gene:

Gene:
LCT
Ensembl Gene ID:
ENSAPLG00000016089
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016808
34722132 - 34738758
16627