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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34729824_34730138_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34729824 - 34730138
Intron Length:
315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAACC
5'SS Class:
major
3'SS Sequence:
TCTGGTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TATTACTGATGC
Flanking Amino Acid:
HKTYIDEALKAYKLDGVNLR
Intron Amino Acid Position:
1071

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
66
38
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
80.6
0.69
0.9
76.9
37.3
Minor 5ss
33
-1.9
3.2
44.5
43
Minor BPS
46
-0.3
2.1
61.73
43

Associated Gene:

Gene:
LCT
Ensembl Gene ID:
ENSAPLG00000016089
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016808
34722132 - 34738758
16627