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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34733473_34735456_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34733473 - 34735456
Intron Length:
1984

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
ATGGGTTTATGC
Flanking Amino Acid:
RSLAQGLKQSRLPEFTESEK
Intron Amino Acid Position:
1428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69.1
35.7
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.8
84.5
30.4
Minor 5ss
31.2
-2.1
3.3
40.6
45.1
Minor BPS
40.1
-0.7
2.1
47.37
43

Associated Gene:

Gene:
LCT
Ensembl Gene ID:
ENSAPLG00000016089
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016808
34722132 - 34738758
16627