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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34735592_34736610_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34735592 - 34736610
Intron Length:
1019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCCTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TCCTCCTCCACA
Flanking Amino Acid:
STGILSYDSDRGVASVTDRT
Intron Amino Acid Position:
1473

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.8
22.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
77.5
0.62
0.7
71.8
26.4
Minor 5ss
39.6
-1.2
3.1
55.7
48.5
Minor BPS
54.6
0.14
2
67.11
45.4

Associated Gene:

Gene:
LCT
Ensembl Gene ID:
ENSAPLG00000016089
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016808
34722132 - 34738758
16627