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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34737860_34738546_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34737860 - 34738546
Intron Length:
687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCCCCTGCACA
Flanking Amino Acid:
PHPCLEPEPEATPTVPTTVE
Intron Amino Acid Position:
1627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
72.6
0.51
0.9
67.7
32.3
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
54.2
0.12
2
69.78
42.3

Associated Gene:

Gene:
LCT
Ensembl Gene ID:
ENSAPLG00000016089
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016808
34722132 - 34738758
16627