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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34759230_34760140_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34759230 - 34760140
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGAAT
5'SS Class:
major
3'SS Sequence:
TTTCTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
CCGATTTTGATT
Flanking Amino Acid:
ASTDLGAGEPVVGKVLEITE
Intron Amino Acid Position:
1026

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.7
36.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
89.5
0.89
0.7
88.2
29.1
Minor 5ss
39.4
-1.2
3.3
56.4
48
Minor BPS
49.3
0.03
1.3
57.69
40.5

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000033977
34758868 - 34807312
48445
ENSAPLT00000043654
34758868 - 34808395
49528
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528