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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34761107_34762545_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34761107 - 34762545
Intron Length:
1439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTCTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATTACCT
Flanking Amino Acid:
QFSRPFVPGQGDARYPLLGQ
Intron Amino Acid Position:
970

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
82.9
29.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.9
0.65
1
83.2
25.7
Minor 5ss
55.6
0.19
2.5
75.5
40.6
Minor BPS
53.2
0.18
2.1
78.09
43.9

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000033977
34758868 - 34807312
48445
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528