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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34766290_34766864_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34766290 - 34766864
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGAGGA
5'SS Class:
major
3'SS Sequence:
TCTGCTTTCATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTAGCCTTATTT
Flanking Amino Acid:
SQQLQGQQCAVYSNHSSQKP
Intron Amino Acid Position:
807

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
58.2
41.2
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
76.7
0.6
0.8
71.9
32.7
Minor 5ss
24.8
-2.9
3.2
30.4
42.8
Minor BPS
65.1
0.55
1.7
80.58
41.6

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000033977
34758868 - 34807312
48445
ENSAPLT00000046710
34758868 - 34808395
49528