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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34769337_34773368_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34769337 - 34773368
Intron Length:
4032

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTGA
5'SS Class:
major
3'SS Sequence:
TGTATAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TAATATTTAAAT
Flanking Amino Acid:
QPLAQPGQQTGYQVLPNQQQ
Intron Amino Acid Position:
671

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
68.8
38.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
75.6
0.58
1
71.3
43
Minor 5ss
42
-0.9
2.4
50.7
45.6
Minor BPS
62.5
0.47
1.6
76.76
38.9

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000033977
34758868 - 34807312
48445
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528