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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34774507_34776991_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34774507 - 34776991
Intron Length:
2485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATTATAT
5'SS Class:
major
3'SS Sequence:
TTAACAACTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACA
Flanking Amino Acid:
PVSSTQQYSVQDNLGSQFSH
Intron Amino Acid Position:
493

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1
64.9
34.9
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
68
0.41
1
59.7
40.4
Minor 5ss
45.9
-0.4
2.9
61.6
45.1
Minor BPS
86.3
1.14
0.8
90.59
23.6

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035405
34758868 - 34808395
49528
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528