Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34778766_34784970_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34778766 - 34784970

Intron Length:

6205

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTACAA

5'SS Class:

major

3'SS Sequence:

TTCAACTTCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTCAA

U12 Branch Point Sequence:

TCTTTTTCAACT

Flanking Amino Acid:

SKSTGRLSKTGQPFLNPDGT

Intron Amino Acid Position:

407

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.8

0.51

1.1

62.4

37.6

Major BPS

90.8

1.01

0.7

91.9

19.6

Major PPT

74.2

0.55

0.9

65.3

40.7

Minor 5ss

37.4

-1.4

47.8

47.7

Minor BPS

69.2

0.68

1.5

83.3

38.2

Associated Gene:

Gene:

R3HDM1

Ensembl Gene ID:

ENSAPLG00000015231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031200

34758868 - 34808395

49528

ENSAPLT00000033977

34758868 - 34807312

48445