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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34787258_34789783_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34787258 - 34789783
Intron Length:
2526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CAACTTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTCTAACAACT
Flanking Amino Acid:
VIVNKTSNTRIPDQKFCEHI
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
69.8
0.44
0.9
64.5
36
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
48
-0
2
76.16
39.6

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000033977
34758868 - 34807312
48445
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528