Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34787634_34789783_R

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

34787634 - 34789783

Intron Length:

2150

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTGTA

5'SS Class:

strong_major

3'SS Sequence:

GAAATGAACTGAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TTTCCCTTGAAA

Flanking Amino Acid:

VIVNKTSNTRMYYNCSRKKN

Intron Amino Acid Position:

233

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

83.5

27.8

Major BPS

83.9

0.84

73.9

41.3

Major PPT

41.4

-0.4

1.7

36.9

43.7

Minor 5ss

38.7

-1.3

3.4

53.7

43.8

Minor BPS

73.4

0.73

1.4

81.66

32.5

Associated Gene:

Gene:

R3HDM1

Ensembl Gene ID:

ENSAPLG00000015231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032893

34758868 - 34808395

49528

ENSAPLT00000035405

34758868 - 34808395

49528