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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34790074_34791591_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34790074 - 34791591
Intron Length:
1518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTGTTTTTATTT
Flanking Amino Acid:
FLVNTLKNNPRDRMMLLKLE
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.7
0.98
0.8
85.3
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94.3
1
0.6
93.1
23.6
Minor 5ss
43.9
-0.7
2.9
60.2
44.5
Minor BPS
57.8
0.32
1.6
71.48
40.5

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528