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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34793987_34800005_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34793987 - 34800005
Intron Length:
6019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGGTAG
5'SS Class:
major
3'SS Sequence:
TTACTTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TTACTTTTGACA
Flanking Amino Acid:
SFGQTAKRSKEKIQIQLSHC
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
66.7
41.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
78.6
0.64
1
76
37.8
Minor 5ss
35
-1.7
3.4
46
49.3
Minor BPS
65.4
0.48
1.2
71.91
33.5

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046710
34758868 - 34808395
49528