Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34793987_34807101_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34793987 - 34807101

Intron Length:

13115

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTAAGAAGC

5'SS Class:

strong_major

3'SS Sequence:

TTACTTTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAATAAT

U12 Branch Point Sequence:

TTACTTTTGACA

Flanking Amino Acid:

NCPDSKNNMPEKIQIQLSHC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.6

0.75

70.2

40.5

Major BPS

71.2

0.53

70.3

31.9

Major PPT

78.6

0.64

37.8

Minor 5ss

34.3

-1.8

44.9

42.8

Minor BPS

65.4

0.48

1.2

71.91

33.5

Associated Gene:

Gene:

R3HDM1

Ensembl Gene ID:

ENSAPLG00000015231

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041977

34758868 - 34808395

49528

ENSAPLT00000033977

34758868 - 34807312

48445