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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34800048_34807101_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34800048 - 34807101
Intron Length:
7054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAGC
5'SS Class:
strong_major
3'SS Sequence:
GCCCATCATCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
TGTAATATAAAC
Flanking Amino Acid:
NCPDSKNNMPRPVQSFGQTA
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
70.2
40.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
64.3
0.32
1
54.1
40.3
Minor 5ss
34.3
-1.8
3
44.9
42.8
Minor BPS
46.2
-0.3
1.8
59.65
38.4

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000046710
34758868 - 34808395
49528
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528