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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34807313_34808186_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
34807313 - 34808186
Intron Length:
874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTGTCCTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
82.6
29.4
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
71.6
0.49
1
71.3
33.6
Minor 5ss
35.2
-1.7
3
49.1
46.7
Minor BPS
51.7
-0
1.9
64.91
42.8

Associated Gene:

Gene:
R3HDM1
Ensembl Gene ID:
ENSAPLG00000015231
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032893
34758868 - 34808395
49528
ENSAPLT00000043654
34758868 - 34808395
49528
ENSAPLT00000031200
34758868 - 34808395
49528
ENSAPLT00000041977
34758868 - 34808395
49528
ENSAPLT00000015922
34758868 - 34808395
49528
ENSAPLT00000035405
34758868 - 34808395
49528
ENSAPLT00000033801
34758868 - 34808395
49528
ENSAPLT00000046710
34758868 - 34808395
49528