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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3483179_3486391_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3483179 - 3486391
Intron Length:
3213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
CAATACTTACTG
Flanking Amino Acid:
ITGESGAGKTEASKLVMSYV
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
75.4
0.57
0.7
68.8
25
Minor 5ss
33.8
-1.8
2.9
43.3
43.9
Minor BPS
47.7
-0.3
1.9
50.21
43.8

Associated Gene:

Gene:
MYO1B
Ensembl Gene ID:
ENSAPLG00000012334
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033988
3429804 - 3509635
79832
ENSAPLT00000025498
3429804 - 3509635
79832
ENSAPLT00000024058
3429804 - 3509635
79832
ENSAPLT00000012947
3429804 - 3509635
79832