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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34860792_34863047_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34860792 - 34863047
Intron Length:
2256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAC
U12 Branch Point Sequence:
TTTACTAAGACA
Flanking Amino Acid:
IIIIQNKTDTGRISTSKVTI
Intron Amino Acid Position:
117

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.3
31.1
Major BPS
70
0.5
0.9
61.4
35.9
Major PPT
88.2
0.86
0.6
81.7
30.3
Minor 5ss
29.2
-2.4
2.5
25
36.8
Minor BPS
48.2
-0.1
2
67.95
38.4

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137