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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34865026_34867658_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34865026 - 34867658
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTATTG
5'SS Class:
major
3'SS Sequence:
ATTTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGATTTTTATTT
Flanking Amino Acid:
YAKKYCNAHLRFFGKRAQWD
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
67
39
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
92.1
0.95
0.7
85.1
34.9
Minor 5ss
47.7
-0.2
2.8
64.9
46.4
Minor BPS
58.8
0.35
1.5
72.71
38.8

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137