About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34868396_34869706_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34868396 - 34869706
Intron Length:
1311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATG
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTACTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
ATATATTTAACT
Flanking Amino Acid:
RMYKETAIAKAGAVKDYIKM
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
81.8
38.5
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
82.1
0.72
0.8
74
35.3
Minor 5ss
43
-0.8
2.9
56.9
47.4
Minor BPS
72.5
0.78
1.4
84.51
35.4

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137