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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34870662_34871184_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34870662 - 34871184
Intron Length:
523

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTGGTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTTCCTAAAAT
Flanking Amino Acid:
AILSIQAAGQGLTFTAATHV
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
77.8
33.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
71
0.47
1.1
73.7
41.5
Minor 5ss
40.1
-1.1
3.4
55.5
48.7
Minor BPS
75.3
0.87
1.7
93.4
34.6

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137