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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34871365_34872590_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34871365 - 34872590
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTCTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTTCAGAACT
Flanking Amino Acid:
PLMWAMLNRKAKVTGSTLNG
Intron Amino Acid Position:
464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.9
77.9
36.9
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
88.7
0.87
0.6
84.3
23.6
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
60.8
0.42
1.8
81.51
39.8

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137