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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34875982_34877494_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34875982 - 34877494
Intron Length:
1513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACCTG
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCATCTGTAAAC
Flanking Amino Acid:
NTDRIHLYTKDGEPLNHNFI
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
66
45.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.5
0.75
0.8
81.1
30.9
Minor 5ss
40.8
-1
3.2
55.8
48.4
Minor BPS
50.2
-0
2.1
64
41.7

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137