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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34881541_34882427_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34881541 - 34882427
Intron Length:
887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTCTGTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCTCTGTAAAC
Flanking Amino Acid:
ASTEQSGHFTKLLLENRKGF
Intron Amino Acid Position:
896

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
69.8
0.45
1
65.7
39
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
55.5
0.15
2.1
70.99
40.7

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137