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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34882813_34883949_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34882813 - 34883949
Intron Length:
1137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTAATA
5'SS Class:
major
3'SS Sequence:
CTGCTTATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
CTCTGCTTATTG
Flanking Amino Acid:
SWMSHLPLGQLNEIITNPTE
Intron Amino Acid Position:
1025

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
75.3
33.9
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
79
0.65
0.9
73.4
35.7
Minor 5ss
43.2
-0.7
2.8
58
46.2
Minor BPS
47.9
-0.3
2.1
54.24
47.5

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137