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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34884082_34884943_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34884082 - 34884943
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAAGCAA
U12 Branch Point Sequence:
ACAACAGTACCT
Flanking Amino Acid:
QTLCTICHRERTAKQAKERS
Intron Amino Acid Position:
1069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1.2
81.8
38.5
Major BPS
43.7
-0.4
1.3
47.4
36
Major PPT
91.7
0.94
0.6
87.8
22.3
Minor 5ss
34.8
-1.7
2.7
42.5
44.3
Minor BPS
40.4
-0.6
2.3
57.06
45

Associated Gene:

Gene:
ZRANB3
Ensembl Gene ID:
ENSAPLG00000014815
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015463
34837906 - 34885042
47137