Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34896485_34896794_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

34896485 - 34896794

Intron Length:

310

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTGAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

ATTTTTTGTGTAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTTTTAT

U12 Branch Point Sequence:

TTTCTTTTATTT

Flanking Amino Acid:

NNPPPENEDYNLFSQFKSAP

Intron Amino Acid Position:

446

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

24.8

Major BPS

84.1

0.85

0.9

75.3

39.4

Major PPT

80.7

0.69

0.9

77.7

Minor 5ss

43.1

-0.8

3.1

62.8

Minor BPS

62.9

0.48

1.5

80.46

35.9

Associated Gene:

Gene:

RAB3GAP1

Ensembl Gene ID:

ENSAPLG00000014149

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039386

34887298 - 34908204

20907

ENSAPLT00000014826

34887298 - 34908204

20907