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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34898390_34898916_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34898390 - 34898916
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTCTTACAG
Flanking Amino Acid:
RKADNPQCLLGDFLNEFFKL
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
86.5
0.82
0.8
80.4
31.7
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
55.6
0.04
1.8
65.72
41.9

Associated Gene:

Gene:
RAB3GAP1
Ensembl Gene ID:
ENSAPLG00000014149
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014826
34887298 - 34908204
20907
ENSAPLT00000039386
34887298 - 34908204
20907