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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34899502_34900257_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
34899502 - 34900257
Intron Length:
756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
GAGTCTTAAATC
Flanking Amino Acid:
LPFGACEDPISELHLATTWP
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
83.3
0.75
0.9
80.8
36.8
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
54.5
0.12
1.7
59.72
40

Associated Gene:

Gene:
RAB3GAP1
Ensembl Gene ID:
ENSAPLG00000014149
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039386
34887298 - 34908204
20907
ENSAPLT00000014826
34887298 - 34908204
20907