About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34908091_34908186_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34908091 - 34908186
Intron Length:
96

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
TCTCTCCCCACA
Flanking Amino Acid:
MAADSEPESEVFEITD
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
81.3
32.8
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
78.6
0.64
0.7
72.6
25.7
Minor 5ss
36.8
-1.5
3.5
55
49.2
Minor BPS
42.6
-0.5
2.1
57.29
42

Associated Gene:

Gene:
RAB3GAP1
Ensembl Gene ID:
ENSAPLG00000014149
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014826
34887298 - 34908204
20907