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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34927653_34927750_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
34927653 - 34927750
Intron Length:
98

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGTTCAT
5'SS Class:
major
3'SS Sequence:
TGTCACATACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTCCCTTACCC
Flanking Amino Acid:
SKMSKSSKSSGGLRTSQHPR
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
70.7
41.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
65.3
0.34
1
56.5
43
Minor 5ss
34.6
-1.8
3.3
49.6
46.6
Minor BPS
67.5
0.53
1.7
75.89
40.7

Associated Gene:

Gene:
CCNT2
Ensembl Gene ID:
ENSAPLG00000013992
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024893
34927588 - 34952616
25029