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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_34928901_34929127_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
34928901 - 34929127
Intron Length:
227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCTGCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
ATTTTCTCACTT
Flanking Amino Acid:
SRLKRIRNWRANQAARKPKG
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
80.7
33.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
71.8
0.49
0.9
67.9
32.2
Minor 5ss
34.7
-1.7
3
41.3
44.8
Minor BPS
57.5
0.31
1.8
77.99
38.9

Associated Gene:

Gene:
CCNT2
Ensembl Gene ID:
ENSAPLG00000013992
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043540
34927488 - 34951188
23701
ENSAPLT00000030350
34926735 - 34951188
24454
ENSAPLT00000024893
34927588 - 34952616
25029
ENSAPLT00000014600
34927488 - 34950555
23068